STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hpfSigma 54 modulation protein/ribosomal protein S30EA; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. (216 aa)    
Predicted Functional Partners:
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
    
   0.994
rpsI
PFAM: ribosomal protein S9; KEGG: ank:AnaeK_3453 ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
   
 
 0.957
rpsC
Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
    
   0.938
rpmC
TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29; KEGG: hne:HNE_2843 ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.
  
 
 
 0.925
rplO
Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
  
 
 0.908
rpmA
TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; KEGG: mca:MCA2247 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
   
 
 0.899
rplI
Ribosomal protein L9; Binds to the 23S rRNA.
 
   0.889
rplU
Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
 
   0.881
rpmH
TIGRFAM: ribosomal protein L34; PFAM: ribosomal protein L34; KEGG: sus:Acid_1093 50S ribosomal protein L34P; Belongs to the bacterial ribosomal protein bL34 family.
   
 
 0.876
rpsJ
Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
  
   0.874
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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