STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2509PFAM: protein of unknown function DUF214; KEGG: cvi:CV_4396 ABC transporter permease. (399 aa)    
Predicted Functional Partners:
Xcel_2511
Hypothetical protein; KEGG: scl:sce4824 HlyD family secretion protein.
 
 
 0.986
Xcel_2510
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pst:PSPTO_2159 macrolide ABC efflux protein.
   0.970
Xcel_3157
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gur:Gura_3474 ABC transporter related.
   0.862
Xcel_1616
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ppd:Ppro_3234 ABC transporter related.
   0.806
Xcel_0816
PFAM: protein of unknown function DUF214; KEGG: gur:Gura_3474 ABC transporter related.
 
  
 0.772
Xcel_0815
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gur:Gura_3474 ABC transporter related.
   0.757
Xcel_2721
KEGG: ade:Adeh_3797 hypothetical protein.
  
 
 0.734
Xcel_0028
PFAM: ABC transporter related; protein of unknown function DUF214; SMART: AAA ATPase; KEGG: gur:Gura_3474 ABC transporter related; Belongs to the ABC transporter superfamily. Macrolide exporter (TC 3.A.1.122) family.
 
   0.693
Xcel_0188
PFAM: RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; KEGG: cvi:CV_2787 ribosome-associated heat shock protein HSP15.
   
    0.687
Xcel_0231
PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: bpt:Bpet1203 HlyD family secretion protein.
  
  
 0.681
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.