STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2522PFAM: RDD domain containing protein; KEGG: smt:Smal_3843 RDD domain containing protein. (272 aa)    
Predicted Functional Partners:
Xcel_2521
PFAM: protein of unknown function DUF95 transmembrane; KEGG: mxa:MXAN_3115 hypothetical protein.
 
    0.941
Xcel_2519
PFAM: protein of unknown function DUF58; KEGG: mxa:MXAN_4679 hypothetical protein.
 
    0.792
Xcel_2516
KEGG: bha:BH0729 hypothetical protein.
 
    0.785
Xcel_2517
KEGG: scl:sce1390 hypothetical protein.
 
    0.785
Xcel_2515
KEGG: mxa:MXAN_3266 hypothetical protein.
 
     0.783
Xcel_0188
PFAM: RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; KEGG: cvi:CV_2787 ribosome-associated heat shock protein HSP15.
  
    0.567
Xcel_2518
PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: hne:HNE_1205 AAA family ATPase.
 
    0.505
Xcel_0448
Hypothetical protein.
  
   
 0.449
Xcel_2520
PFAM: hydrophobic; peptidase M15B and M15C DD- carboxypeptidase VanY/endolysin; SMART: hydrophobic; KEGG: sdn:Sden_2868 peptidase S8 and S53, subtilisin, kexin, sedolisin.
  
    0.425
Xcel_0254
KEGG: ade:Adeh_3637 DNA polymerase III, subunits gamma and tau; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase.
 
 
   0.415
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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