STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2533PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain protein; KEGG: xau:Xaut_1602 galactarate dehydratase. (533 aa)    
Predicted Functional Partners:
Xcel_2656
PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: bsu:BSU12380 altronate oxidoreductase.
 
 0.982
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
 
 0.961
Xcel_2538
TIGRFAM: 2-deoxy-D-gluconate 3-dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bcj:BCAM0155 2-deoxy-D-gluconate 3- dehydrogenase.
 
  
 0.945
Xcel_2666
PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: vvy:VVA1593 mannonate oxidoreductase.
  
 0.912
Xcel_2650
PFAM: Glucuronate isomerase; KEGG: rsh:Rsph17029_2139 glucuronate isomerase.
  
 0.875
Xcel_0908
PFAM: PfkB domain protein; KEGG: scl:sce5155 putative 2-dehydro-3- deoxygluconokinase.
 
  
 0.848
Xcel_2532
PFAM: glycoside hydrolase family 28; SMART: Parallel beta-helix repeat; KEGG: sus:Acid_1250 glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 28 family.
 
   
 0.826
Xcel_1105
TIGRFAM: ribose 5-phosphate isomerase; sugar- phosphate isomerase, RpiB/LacA/LacB family; PFAM: Ribose/galactose isomerase; KEGG: sfu:Sfum_1376 sugar-phosphate isomerases, RpiB/LacA/LacB family.
     
 0.810
Xcel_1889
6-phosphogluconate dehydrogenase, decarboxylating; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.
     
 0.801
Xcel_0003
TIGRFAM: 6-phosphogluconate dehydrogenase, decarboxylating; PFAM: 6-phosphogluconate dehydrogenase NAD-binding; 6-phosphogluconate dehydrogenase domain protein; KEGG: dde:Dde_3470 6-phosphogluconate dehydrogenase- like protein.
     
  0.800
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.