STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kduI4-deoxy-L-threo-5-hexosulose-uronateketol- isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family. (283 aa)    
Predicted Functional Partners:
Xcel_2538
TIGRFAM: 2-deoxy-D-gluconate 3-dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bcj:BCAM0155 2-deoxy-D-gluconate 3- dehydrogenase.
 
 0.990
Xcel_2540
PFAM: glycosyl hydrolase family 88; KEGG: hypothetical protein.
 
   
 0.951
Xcel_2532
PFAM: glycoside hydrolase family 28; SMART: Parallel beta-helix repeat; KEGG: sus:Acid_1250 glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 28 family.
 
   
 0.792
Xcel_2656
PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: bsu:BSU12380 altronate oxidoreductase.
 
   
 0.718
Xcel_2650
PFAM: Glucuronate isomerase; KEGG: rsh:Rsph17029_2139 glucuronate isomerase.
 
  
 0.620
Xcel_2533
PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain protein; KEGG: xau:Xaut_1602 galactarate dehydratase.
 
  
 0.564
Xcel_2971
Phosphate uptake regulator, PhoU; Plays a role in the regulation of phosphate uptake.
   
    0.533
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
  
 0.481
Xcel_1516
PFAM: NAD-dependent epimerase/dehydratase; domain of unknown function DUF1731; KEGG: dol:Dole_3066 hypothetical protein.
   
    0.448
Xcel_2537
PFAM: extracellular solute-binding protein family 1; KEGG: bsu:BSU06970 hypothetical protein.
       0.412
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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