STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2553KEGG: rru:Rru_A2121 hypothetical protein. (479 aa)    
Predicted Functional Partners:
Xcel_2551
PFAM: Methyltransferase type 11; methyltransferase small; Methyltransferase type 12; KEGG: gme:Gmet_1390 SAM-binding motif-containing protein.
     0.979
Xcel_2554
PFAM: glycosyl transferase family 2; KEGG: amc:MADE_02590 glycosyl transferase, family 2.
 
   0.905
Xcel_2552
KEGG: rru:Rru_A2122 hypothetical protein.
 
    0.880
Xcel_2555
Hypothetical protein; KEGG: xcv:XCV1252 putative glycosyltransferase.
     
 0.778
Xcel_0786
PFAM: UvrD/REP helicase; HRDC domain protein; SMART: HRDC domain protein; KEGG: gsu:GSU3411 ATP-dependent DNA helicase PcrA, putative.
    
 
 0.622
Xcel_1304
KEGG: rce:RC1_1069 hypothetical protein.
   
 
 0.599
Xcel_0373
PFAM: glycosyl transferase group 1; KEGG: pca:Pcar_1523 glycosyltransferase.
  
     0.586
Xcel_2557
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
  
  
 0.581
Xcel_2926
KEGG: ade:Adeh_2455 undecaprenyl-phosphate galactosephosphotransferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase.
  
  
 0.576
Xcel_2560
KEGG: nar:Saro_3237 dTDP-4-dehydrorhamnose 3,5- epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related.
 
  
 0.568
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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