STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2587PFAM: ABC-2 type transporter; KEGG: gsu:GSU1504 ABC transporter permease. (324 aa)    
Predicted Functional Partners:
Xcel_2586
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bat:BAS5118 teichoic acids export protein ATP- binding subunit.
 
 0.999
Xcel_2572
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sfu:Sfum_3354 ABC transporter related.
 
 
 0.979
Xcel_2546
PFAM: glycosyl transferase family 2; KEGG: bpy:Bphyt_0850 glycosyl transferase family 2.
  
  
 0.779
Xcel_2582
PFAM: glycosyl transferase family 2; KEGG: swi:Swit_4001 glycosyl transferase family protein.
 
  
 0.715
Xcel_2575
KEGG: eta:ETA_13410 UDP-galactopyranose mutase; TIGRFAM: UDP-galactopyranose mutase; PFAM: UDP-galactopyranose mutase-like.
  
  
 0.591
Xcel_2584
PFAM: glycosyl transferase family 2; CDP- glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: neu:NE1370 glycosyl transferase family protein.
 
  
 0.569
Xcel_2588
TIGRFAM: cytidyltransferase-related domain protein; PFAM: oxidoreductase domain protein; cytidylyltransferase; KEGG: bac:BamMC406_1473 oxidoreductase domain- containing protein.
     
 0.568
Xcel_2583
PFAM: glycosyl transferase family 2; glycosyl transferase group 1; KEGG: waaV; lipooligosaccharide biosynthesis glycosyltransferase.
 
  
 0.544
Xcel_2574
Glycosyltransferase-like protein; KEGG: gox:GOX1489 putative glycosyltransferase.
  
  
 0.541
Xcel_2585
PFAM: glycosyl transferase family 2; KEGG: bja:blr6003 glycosyl transferase.
 
  
 0.498
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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