STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2620PFAM: PilT protein domain protein; KEGG: mca:MCA1623 virulence associated protein VagD, putative. (134 aa)    
Predicted Functional Partners:
Xcel_2619
Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
   
   0.822
vapC-10
PilT protein domain protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
     0.774
Xcel_0153
KEGG: noc:Noc_0441 putative plasmid protein.
  
 
 0.709
Xcel_1766
TIGRFAM: prevent-host-death family protein; KEGG: rpb:RPB_0354 prevent-host-death protein.
   
 
 0.695
Xcel_2618
PFAM: aldo/keto reductase; KEGG: mrd:Mrad2831_5462 aldo/keto reductase.
       0.639
Xcel_0463
KEGG: mpo:Mpop_2092 hypothetical protein.
 
     0.595
Xcel_2621
PFAM: Glu/Leu/Phe/Val dehydrogenase; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: ppd:Ppro_1713 Glu/Leu/Phe/Val dehydrogenase, C terminal; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
       0.580
Xcel_0075
Hypothetical protein; KEGG: bbt:BBta_7720 plasmid stability protein.
   
 
 0.572
Xcel_2622
TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; KEGG: acp:A2cp1_0395 modification methylase, HemK family.
       0.554
Xcel_2617
PFAM: Aldehyde Dehydrogenase; Proline dehydrogenase; KEGG: dal:Dalk_3943 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
     0.542
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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