STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2650PFAM: Glucuronate isomerase; KEGG: rsh:Rsph17029_2139 glucuronate isomerase. (475 aa)    
Predicted Functional Partners:
Xcel_2666
PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: vvy:VVA1593 mannonate oxidoreductase.
 
 
 0.983
Xcel_2656
PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: bsu:BSU12380 altronate oxidoreductase.
 
 
 0.973
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
  
 0.914
Xcel_2533
PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain protein; KEGG: xau:Xaut_1602 galactarate dehydratase.
  
 0.875
Xcel_0402
PFAM: class II aldolase/adducin family protein; KEGG: asa:ASA_2398 L-ribulose-5-phosphate 4- epimerase.
    
 0.828
Xcel_0412
Alpha-N-arabinofuranosidase; PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: bha:BH1861 alpha-L-arabinofuranosidase.
     
 0.821
Xcel_2782
Alpha-N-arabinofuranosidase; PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: bha:BH1874 alpha-L-arabinosidase.
     
 0.821
Xcel_0114
PFAM: glycoside hydrolase family 39; KEGG: cja:CJA_3008 beta-xylosidase, putative, xyl39A.
     
  0.800
Xcel_0370
Xylan 1,4-beta-xylosidase; PFAM: glycoside hydrolase family 39; KEGG: bha:BH1068 beta-xylosidase.
     
  0.800
Xcel_2663
Xylan 1,4-beta-xylosidase; PFAM: glycoside hydrolase family 39; KEGG: bha:BH1068 beta-xylosidase.
     
  0.800
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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