STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2675PFAM: major facilitator superfamily MFS_1; KEGG: bcz:BCZK5068 multidrug resistance protein; permease. (402 aa)    
Predicted Functional Partners:
Xcel_0313
PFAM: cyclase family protein; KEGG: plu:plu1439 hypothetical protein.
   
    0.557
Xcel_0460
PFAM: regulatory protein TetR; KEGG: mxa:MXAN_5545 transcriptional regulator, TetR family.
  
    0.480
Xcel_2676
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: jan:Jann_0866 cyclic nucleotide-regulated FAD- dependent pyridine nucleotide-disulphide oxidoreductase.
       0.422
Xcel_0493
PFAM: cell divisionFtsK/SpoIIIE; SMART: Forkhead-associated protein; AAA ATPase; KEGG: bcb:BCB4264_A2089 FtsK/SpoIIIE family protein.
  
   
 0.409
Xcel_1566
PFAM: major facilitator superfamily MFS_1; KEGG: xcv:XCV2339 putative major facilitator superfamily protein.
  
     0.407
Xcel_3217
TIGRFAM: YhgE/Pip N-terminal domain protein; KEGG: bca:BCE_1178 hypothetical protein.
  
 
   0.405
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.