STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2684KEGG: sus:Acid_4394 endo-1,4-beta-xylanase; PFAM: glycoside hydrolase family 10; Carbohydrate- binding CenC domain protein; Carbohydrate-binding family 9; Carbohydrate-binding family V/XII; SMART: glycoside hydrolase family 10; Carbohydrate- binding family V/XII. (1242 aa)    
Predicted Functional Partners:
Xcel_0742
Endo-1,4-beta-xylanase; KEGG: sde:Sde_3061 xylanase/chitin deacetylase-like; PFAM: glycoside hydrolase family 11; cellulose- binding family II; SMART: cellulose-binding family II; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
 
   
 0.799
Xcel_0371
Alpha-glucuronidase; PFAM: Glycosyl hydrolase 67 middle domain protein; glycosyl hydrolase 67 C-teriminal domain protein; KEGG: bha:BH1061 alpha-glucuronidase.
 
   
 0.784
Xcel_1323
Alpha-N-arabinofuranosidase; PFAM: glycoside hydrolase family 43; KEGG: cja:CJA_3070 beta-xylosidase/alpha-L- arabinfuranosidase, putative, gly43G; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.747
Xcel_0370
Xylan 1,4-beta-xylosidase; PFAM: glycoside hydrolase family 39; KEGG: bha:BH1068 beta-xylosidase.
  
  
 0.719
Xcel_2663
Xylan 1,4-beta-xylosidase; PFAM: glycoside hydrolase family 39; KEGG: bha:BH1068 beta-xylosidase.
  
  
 0.718
Xcel_1150
PFAM: glycoside hydrolase family 6; Fibronectin type III domain protein; cellulose-binding family II; SMART: cellulose-binding family II; Fibronectin type III domain protein; KEGG: xfa:XF1267 1,4-beta-cellobiosidase; Belongs to the glycosyl hydrolase family 6.
 
   
 0.717
Xcel_1622
KEGG: cja:CJA_3068 hypothetical protein.
  
  
 0.712
Xcel_0504
PFAM: glycoside hydrolase family 5; cellulose- binding family II; SMART: cellulose-binding family II; KEGG: sde:Sde_0064 putative secreted beta- mannosidase.
 
     0.707
Xcel_1153
PFAM: glycoside hydrolase family 48; Fibronectin type III domain protein; cellulose-binding family II; SMART: cellulose-binding family II; Fibronectin type III domain protein; KEGG: hch:HCH_02465 RTX toxins and related Ca2+- binding protein.
 
     0.667
Xcel_2470
PFAM: chitin-binding domain 3 protein; Fibronectin type III domain protein; cellulose-binding family II; SMART: cellulose-binding family II; Fibronectin type III domain protein; KEGG: cvi:CV_2592 carbohydrate-binding protein.
 
  
 0.648
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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