STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2688KEGG: glo:Glov_1509 transferase hexapeptide repeat containing protein. (198 aa)    
Predicted Functional Partners:
Xcel_2701
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: ret:RHE_CH01364 oxidoreductase protein.
     0.967
Xcel_2700
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: lch:Lcho_1398 glutamine--scyllo-inositol transaminase; Belongs to the DegT/DnrJ/EryC1 family.
   
 0.928
Xcel_0693
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
  
 
 0.802
Xcel_2689
KEGG: hypothetical protein.
       0.773
Xcel_2691
KEGG: pde:Pden_0844 glycosyl transferase, family 2.
 
   
 0.684
prs
Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.
  
  
 0.637
Xcel_1649
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: rle:RL0094 GFO/IDH/MocA family oxidoreductase.
     0.622
Xcel_2694
KEGG: pat:Patl_2044 hypothetical protein.
 
     0.590
Xcel_2693
PFAM: glycosyl transferase family 2; KEGG: smd:Smed_4788 glycosyl transferase family 2.
 
     0.545
Xcel_2692
PFAM: GMC oxidoreductase; FAD dependent oxidoreductase; KEGG: bra:BRADO2203 hypothetical protein.
  
    0.511
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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