STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2699KEGG: dol:Dole_1207 hypothetical protein. (394 aa)    
Predicted Functional Partners:
Xcel_2698
PFAM: glycosyl transferase group 1; KEGG: ank:AnaeK_1401 glycosyl transferase family 2.
 
    0.865
Xcel_2926
KEGG: ade:Adeh_2455 undecaprenyl-phosphate galactosephosphotransferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase.
  
  
 0.700
Xcel_1009
PFAM: PfkB domain protein; KEGG: hch:HCH_06560 ribokinase family sugar kinase.
  
     0.662
Xcel_2701
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: ret:RHE_CH01364 oxidoreductase protein.
 
     0.618
Xcel_1601
TIGRFAM: DNA binding domain protein, excisionase family; KEGG: cak:Caul_0338 DNA binding domain-containing protein.
  
     0.600
Xcel_2700
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: lch:Lcho_1398 glutamine--scyllo-inositol transaminase; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.597
Xcel_1222
PFAM: major facilitator superfamily MFS_1; KEGG: reu:Reut_B5716 major facilitator transporter.
  
    0.573
Xcel_2112
Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: scl:sce1231 putative HTH-type transcriptional regulator betl 5'region.
  
     0.515
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.