STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2713Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: cti:RALTA_A0035 putative transcriptional regulator, MarR family. (196 aa)    
Predicted Functional Partners:
Xcel_2711
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bsu:BSU09890 hypothetical protein.
       0.598
Xcel_2712
ABC-type Na+ efflux pump permease component- like protein; KEGG: scl:sce9075 hypothetical protein.
       0.598
Xcel_2714
PFAM: major facilitator superfamily MFS_1; KEGG: zmo:ZMO1111 ABC transporter.
       0.571
Xcel_2710
PFAM: regulatory protein TetR; KEGG: mxa:MXAN_5545 transcriptional regulator, TetR family.
       0.538
Xcel_2849
Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: bmj:BMULJ_04209 MarR family transcriptional regulator.
  
     0.445
Xcel_2239
PFAM: major facilitator superfamily MFS_1; KEGG: kpn:KPN_01621 putative MFS-type transporter YdeE.
     
 0.434
rplY
Ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.
  
  
 0.415
Xcel_0163
PFAM: major facilitator superfamily MFS_1; KEGG: smt:Smal_0426 major facilitator superfamily MFS_1.
  
     0.410
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.