STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2714PFAM: major facilitator superfamily MFS_1; KEGG: zmo:ZMO1111 ABC transporter. (429 aa)    
Predicted Functional Partners:
Xcel_2082
PFAM: protein of unknown function DUF328; KEGG: rsh:Rsph17029_0026 hypothetical protein; Belongs to the UPF0246 family.
  
    0.724
Xcel_2713
Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: cti:RALTA_A0035 putative transcriptional regulator, MarR family.
       0.571
Xcel_0118
PFAM: major facilitator superfamily MFS_1; KEGG: pfl:PFL_3504 sugar efflux transporter.
  
     0.526
Xcel_2711
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bsu:BSU09890 hypothetical protein.
       0.447
Xcel_2712
ABC-type Na+ efflux pump permease component- like protein; KEGG: scl:sce9075 hypothetical protein.
       0.447
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.