STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2726PFAM: G5 domain protein; protein of unknown function DUF348; KEGG: bha:BH0055 hypothetical protein. (451 aa)    
Predicted Functional Partners:
rsmA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
  
  
 0.829
ispE
4-diphosphocytidyl-2C-methyl-D-erythritolkinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.
     
 0.605
Xcel_2423
Hypothetical protein; KEGG: vco:VC0395_A1354 HlyD family secretion protein.
  
     0.523
Xcel_1025
TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: bsu:BSU35840 hypothetical protein.
  
     0.511
Xcel_2730
PFAM: TatD-related deoxyribonuclease; KEGG: pca:Pcar_1695 Mg-dependent DNase.
 
   
 0.507
Xcel_1286
PFAM: cell division protein FtsQ; Polypeptide- transport-associated domain protein FtsQ-type; KEGG: swi:Swit_3942 polypeptide-transport- associated domain-containing protein.
  
     0.496
Xcel_1735
PFAM: protein of unknown function DUF881; KEGG: bsu:BSU15250 hypothetical protein.
  
     0.491
Xcel_1026
TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: bce:BC5265 membrane-bound transcriptional regulator LytR.
  
     0.489
Xcel_0014
PFAM: protein of unknown function DUF881; KEGG: bha:BH2562 hypothetical protein.
  
     0.487
Xcel_2942
Hypothetical protein; KEGG: mgm:Mmc1_2179 putative outer membrane adhesin like proteiin.
  
     0.464
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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