STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2727PFAM: Transglycosylase domain protein; protein of unknown function DUF348; G5 domain protein; KEGG: bsu:BSU00400 hypothetical protein. (427 aa)    
Predicted Functional Partners:
rsmA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
  
  
 0.765
Xcel_2446
Hypothetical protein.
  
     0.574
Xcel_0014
PFAM: protein of unknown function DUF881; KEGG: bha:BH2562 hypothetical protein.
  
     0.538
Xcel_1735
PFAM: protein of unknown function DUF881; KEGG: bsu:BSU15250 hypothetical protein.
  
     0.537
Xcel_1737
PFAM: protein of unknown function DUF881; KEGG: similar to predicted protein.
  
     0.521
Xcel_2728
PFAM: Transglycosylase domain protein; protein of unknown function DUF348; G5 domain protein; KEGG: bha:BH0055 hypothetical protein.
 
    
0.497
Xcel_1736
PFAM: protein of unknown function DUF1290; KEGG: bha:BH2560 small basic protein.
  
     0.495
Xcel_2730
PFAM: TatD-related deoxyribonuclease; KEGG: pca:Pcar_1695 Mg-dependent DNase.
     
 0.480
ispE
4-diphosphocytidyl-2C-methyl-D-erythritolkinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.
     
 0.458
Xcel_2726
PFAM: G5 domain protein; protein of unknown function DUF348; KEGG: bha:BH0055 hypothetical protein.
 
    
0.443
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.