STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2729PFAM: G5 domain protein; protein of unknown function DUF348; KEGG: bsu:BSU00400 hypothetical protein. (391 aa)    
Predicted Functional Partners:
Xcel_2730
PFAM: TatD-related deoxyribonuclease; KEGG: pca:Pcar_1695 Mg-dependent DNase.
 
   
 0.730
rsmA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
  
  
 0.727
Xcel_2942
Hypothetical protein; KEGG: mgm:Mmc1_2179 putative outer membrane adhesin like proteiin.
  
     0.530
Xcel_2728
PFAM: Transglycosylase domain protein; protein of unknown function DUF348; G5 domain protein; KEGG: bha:BH0055 hypothetical protein.
 
    
0.529
Xcel_1286
PFAM: cell division protein FtsQ; Polypeptide- transport-associated domain protein FtsQ-type; KEGG: swi:Swit_3942 polypeptide-transport- associated domain-containing protein.
  
     0.491
Xcel_0986
PFAM: ribonuclease BN; KEGG: mpt:Mpe_A0042 BrkB-like serum-resistance protein.
  
     0.484
Xcel_2423
Hypothetical protein; KEGG: vco:VC0395_A1354 HlyD family secretion protein.
  
     0.451
Xcel_2727
PFAM: Transglycosylase domain protein; protein of unknown function DUF348; G5 domain protein; KEGG: bsu:BSU00400 hypothetical protein.
 
    
0.404
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.