STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2736PFAM: glycosyl transferase family 39; KEGG: mca:MCA2192 dolichyl-phosphate-mannose- protein mannosyltransferase family protein. (555 aa)    
Predicted Functional Partners:
Xcel_0005
PFAM: protein of unknown function DUF721; KEGG: protein of unknown function DUF721.
  
     0.719
rsmI
Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.655
Xcel_1290
PFAM: protein of unknown function YGGT; KEGG: bbk:BARBAKC583_0327 YGGT family protein.
  
     0.584
Xcel_0446
PFAM: ResB family protein; KEGG: dal:Dalk_1265 ResB family protein.
  
     0.549
Xcel_2142
Hypothetical protein.
  
     0.531
Xcel_2036
KEGG: hypothetical protein.
  
     0.504
Xcel_1050
Hypothetical protein.
  
     0.491
Xcel_2707
Dolichyl-phosphate beta-D-mannosyltransferase; PFAM: glycosyl transferase family 2; GtrA family protein; KEGG: gox:GOX0129 dolichol-phosphate mannosyltransferase.
    
 
 0.462
Xcel_1741
SMART: regulatory protein MerR; KEGG: afw:Anae109_4225 MerR family transcriptional regulator.
  
     0.457
Xcel_2208
TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta; KEGG: noc:Noc_2663 DNA polymerase III, delta subunit.
  
     0.443
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.