STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2806PFAM: protein of unknown function DUF214; KEGG: large exoprotein involved in heme utilization or adhesion. (1081 aa)    
Predicted Functional Partners:
Xcel_2804
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vvy:VVA1496 peptide ABC transporter ATPase.
 
   0.967
Xcel_2803
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bur:Bcep18194_C6690 ABC transporter, ATPase subunit.
 
   0.917
Xcel_2805
PFAM: protein of unknown function DUF214; KEGG: GK24882 gene product from transcript GK24882- RA.
  
    0.822
Xcel_0028
PFAM: ABC transporter related; protein of unknown function DUF214; SMART: AAA ATPase; KEGG: gur:Gura_3474 ABC transporter related; Belongs to the ABC transporter superfamily. Macrolide exporter (TC 3.A.1.122) family.
  
 
 0.630
Xcel_1870
PFAM: aminoglycoside phosphotransferase; KEGG: scl:sce1315 phosphotransferase.
  
     0.588
Xcel_2807
PFAM: TOBE domain protein; KEGG: aba:Acid345_1548 molybdenum-pterin binding protein.
       0.498
Xcel_2808
TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: scl:sce1135 ABC-type molybdate transporter, substrate-binding protein.
       0.498
Xcel_2809
NifC-like ABC-type porter; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
       0.498
Xcel_2810
PFAM: ABC transporter related; TOBE domain protein; SMART: AAA ATPase; KEGG: mno:Mnod_6773 spermidine/putrescine ABC transporter ATPase subunit.
       0.498
Xcel_2771
Hypothetical protein.
 
     0.461
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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