STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2812PFAM: GCN5-related N-acetyltransferase; KEGG: mes:Meso_0758 GCN5-related N- acetyltransferase. (204 aa)    
Predicted Functional Partners:
Xcel_2811
Hypothetical protein; KEGG: GH10507 gene product from transcript GH10507- RA.
       0.619
Xcel_2813
TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: saz:Sama_2726 5-formyltetrahydrofolate cyclo- ligase family protein; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.
  
    0.603
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
  
    0.545
Xcel_1802
KEGG: csa:Csal_1054 L-lysine 6-monooxygenase (NADPH).
  
  
 0.523
Xcel_0676
TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: afw:Anae109_2472 ribosomal-protein-alanine acetyltransferase.
   
 
 0.441
Xcel_1471
KEGG: ccs:CCNA_00319 acetyltransferase, GNAT family.
  
   
 0.441
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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