STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2823PFAM: protein of unknown function DUF214; KEGG: afw:Anae109_1773 hypothetical protein. (447 aa)    
Predicted Functional Partners:
Xcel_2822
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pde:Pden_3444 ABC transporter related.
    0.943
Xcel_3277
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: regulatory protein LuxR; KEGG: rlt:Rleg2_5436 transcriptional regulator, LuxR family.
  
     0.580
Xcel_0382
KEGG: hypothetical protein.
  
     0.538
Xcel_0206
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: Muc19; mucin 19; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.526
Xcel_2821
PFAM: aminoglycoside phosphotransferase; KEGG: mxa:MXAN_3236 phosphotransferase enzyme family protein.
       0.524
Xcel_0036
KEGG: abb:ABBFA_001367 alpha/beta hydrolase fold family protein.
  
     0.518
Xcel_0736
KEGG: bch:Bcen2424_6766 PE-PGRS family protein.
  
     0.509
Xcel_0140
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: swd:Swoo_1852 hypothetical protein.
  
     0.503
Xcel_2184
Hypothetical protein; KEGG: sus:Acid_5430 peptidase S9 prolyl oligopeptidase.
 
     0.503
Xcel_2824
PFAM: Patatin; KEGG: bur:Bcep18194_B2789 patatin.
       0.485
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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