STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2828TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: pen:PSEEN1988 xylulokinase. (490 aa)    
Predicted Functional Partners:
Xcel_2827
KEGG: aba:Acid345_0903 xylose isomerase; TIGRFAM: xylose isomerase; PFAM: Xylose isomerase domain protein TIM barrel.
 
 
 0.997
Xcel_0402
PFAM: class II aldolase/adducin family protein; KEGG: asa:ASA_2398 L-ribulose-5-phosphate 4- epimerase.
  
 
 0.942
Xcel_1725
KEGG: ppd:Ppro_3241 ribulose-phosphate 3-epimerase; TIGRFAM: ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
 
  
 0.925
Xcel_0885
PFAM: protein of unknown function DUF718; KEGG: atc:AGR_L_2037 hypothetical protein.
  
  
 0.731
Xcel_2826
PFAM: ROK family protein; KEGG: bha:BH2758 transcriptional repressor of the xylose operon.
 
  
 0.717
Xcel_0758
TIGRFAM: galactokinase; PFAM: GHMP kinase domain protein; GHMP kinase; KEGG: aba:Acid345_1701 galactokinase; Belongs to the GHMP kinase family. GalK subfamily.
 
  
 0.708
Xcel_1557
TIGRFAM: transketolase; PFAM: Transketolase central region; Transketolase domain protein; KEGG: sat:SYN_01447 transketolase; Belongs to the transketolase family.
  
 
 0.602
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 2 subfamily.
  
 
 0.575
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
  
  
 0.566
tpiA
Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
  
  
 0.522
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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