STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2829Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: bcm:Bcenmc03_5501 LuxR family transcriptional regulator. (865 aa)    
Predicted Functional Partners:
Xcel_0960
Hypothetical protein.
  
     0.660
Xcel_0137
Putative signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: mpo:Mpop_3746 multi-sensor signal transduction histidine kinase.
  
   0.598
Xcel_1590
PFAM: protein of unknown function DUF214; KEGG: gur:Gura_3474 ABC transporter related.
  
     0.482
Xcel_2828
TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: pen:PSEEN1988 xylulokinase.
       0.471
Xcel_0191
PFAM: GAF domain protein; histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; SMART: GAF domain protein; ATP-binding region ATPase domain protein; KEGG: scl:sce2236 putative two-component system sensor kinase.
  
 
 0.469
Xcel_1350
Transcriptional regulator, winged helix family; PFAM: transcriptional activator domain; transcriptional regulator domain protein; KEGG: bac:BamMC406_5609 transcriptional regulator.
  
    0.425
Xcel_0709
Putative signal transduction histidine kinase; PFAM: PspC domain protein; ATP-binding region ATPase domain protein; KEGG: sus:Acid_1604 integral membrane sensor signal transduction histidine kinase.
  
 
 0.422
Xcel_0077
GAF sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; GAF domain protein; response regulator receiver; regulatory protein LuxR; histidine kinase dimerisation and phosphoacceptor region; SMART: GAF domain protein; response regulator receiver; ATP-binding region ATPase domain protein; regulatory protein LuxR; KEGG: ade:Adeh_1998 periplasmic sensor signal transduction histidine kinase.
  
 
 0.403
Xcel_1768
KEGG: reu:Reut_A0942 putative lipase transmembrane protein.
  
     0.402
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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