STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2842PFAM: UspA domain protein; KEGG: tgr:Tgr7_0866 UspA domain protein. (305 aa)    
Predicted Functional Partners:
Xcel_2819
Hypothetical protein; KEGG: mch:Mchl_4744 putative superfamily I DNA and RNA helicase protein.
  
     0.513
Xcel_1268
Spermidine synthase-like protein; KEGG: bpt:Bpet3209 spermidine synthase (putrescine aminopropyltransferase).
 
    
 0.509
Xcel_2843
PFAM: NLP/P60 protein; KEGG: pag:PLES_41111 putative lipoprotein.
 
     0.507
Xcel_3265
PFAM: conserved hypothetical protein; KEGG: psa:PST_3725 Mg2+ transport ATPase.
  
     0.466
Xcel_3181
TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S- methyltransferase DNA binding; KEGG: azo:azo2292 methylated-DNA--[protein]- cysteine S-methyltransferase.
  
    0.447
Xcel_2227
PFAM: metallophosphoesterase; KEGG: serine/threonine-protein kinase C.
 
     0.444
Xcel_0343
PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; KEGG: bpa:BPP3396 hypothetical protein.
 
   
 0.418
Xcel_1687
Hypothetical protein; KEGG: LAMB1; laminin, beta 1; K05636 laminin, beta 1.
  
    0.417
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.