STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2844PFAM: NLP/P60 protein; KEGG: NLP/P60 protein. (259 aa)    
Predicted Functional Partners:
Xcel_2845
PFAM: iron dependent repressor; FeoA family protein; SMART: iron dependent repressor; regulatory protein Crp; KEGG: sus:Acid_2178 DtxR family iron dependent repressor.
       0.549
Xcel_1036
Cell division protein FtsX; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
 
   
 0.467
Xcel_3356
PFAM: glycosyl transferase family 51; penicillin- binding protein transpeptidase; PASTA domain containing protein; SMART: PASTA domain containing protein; KEGG: mes:Meso_3986 penicillin-binding protein, 1A family.
  
   
 0.446
Xcel_0704
PFAM: OmpA/MotB domain protein; KEGG: oan:Oant_0490 OmpA/MotB domain protein.
 
 
 0.443
Xcel_1037
PFAM: Peptidase M23; KEGG: bha:BH3600 cell wall-binding protein.
 
  
 0.441
Xcel_3357
PFAM: glycosyl transferase family 51; penicillin- binding protein transpeptidase; PASTA domain containing protein; KEGG: rpt:Rpal_0580 penicillin-binding protein, 1A family.
 
  
 0.439
Xcel_2843
PFAM: NLP/P60 protein; KEGG: pag:PLES_41111 putative lipoprotein.
 
    
0.412
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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