STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2853PFAM: SCP-like extracellular; KEGG: pla:Plav_0460 SCP-like extracellular. (179 aa)    
Predicted Functional Partners:
Xcel_2854
Capsular exopolysaccharide family; KEGG: pca:Pcar_1464 uncharacterized exopolysaccharide biosynthesis protein; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein.
       0.787
Xcel_0107
PFAM: inner-membrane translocator; KEGG: rru:Rru_A3415 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
   
   0.767
Xcel_2933
KEGG: SNF2 superfamily protein.
  
    0.695
Xcel_2784
PFAM: extracellular solute-binding protein family 1; KEGG: bha:BH2111 hypothetical protein.
  
    0.449
Xcel_2855
Putative transcriptional regulator; PFAM: AAA-4 family protein; KEGG: tbd:Tbd_2681 transcriptional regulator.
       0.417
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.