STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2855Putative transcriptional regulator; PFAM: AAA-4 family protein; KEGG: tbd:Tbd_2681 transcriptional regulator. (572 aa)    
Predicted Functional Partners:
Xcel_3059
Putative transcriptional regulator; PFAM: AAA-4 family protein; KEGG: noc:Noc_0057 hypothetical protein.
  
  
  0.972
Xcel_2888
Putative transcriptional regulator; PFAM: AAA-4 family protein; KEGG: csa:Csal_0085 putative transcriptional regulator.
  
  
 
0.927
Xcel_2279
ATP-dependent DNA helicase RecG; KEGG: mrd:Mrad2831_1662 DEAD/DEAH box helicase domain-containing protein; TIGRFAM: ATP-dependent DNA helicase RecG; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; nucleic acid binding OB-fold tRNA/helicase-type; SMART: DEAD-like helicase; helicase domain protein.
     
  0.900
Xcel_0288
PFAM: NAD-dependent epimerase/dehydratase; KEGG: gbe:GbCGDNIH1_1597 quinate/shikimate dehydrogenase.
   
    0.435
Xcel_2089
PFAM: NAD-dependent epimerase/dehydratase; KEGG: xcv:XCV0076 hypothetical protein.
   
    0.435
Xcel_2854
Capsular exopolysaccharide family; KEGG: pca:Pcar_1464 uncharacterized exopolysaccharide biosynthesis protein; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein.
       0.418
Xcel_2853
PFAM: SCP-like extracellular; KEGG: pla:Plav_0460 SCP-like extracellular.
       0.417
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.