STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2865KEGG: sfu:Sfum_1849 hypothetical protein. (106 aa)    
Predicted Functional Partners:
Xcel_2866
PFAM: Ethyl tert-butyl ether degradation EthD; KEGG: sfu:Sfum_1850 ethyl tert-butyl ether degradation EthD.
       0.759
Xcel_2867
PFAM: thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein domain protein TPP- binding; KEGG: sfu:Sfum_1851 thiamine pyrophosphate enzyme domain protein TPP-binding; Belongs to the TPP enzyme family.
       0.726
Xcel_2868
PFAM: ThiJ/PfpI domain protein; KEGG: sfu:Sfum_0357 ThiJ/PfpI domain protein.
       0.726
Xcel_2862
PFAM: ThiJ/PfpI domain protein; KEGG: sfu:Sfum_0357 ThiJ/PfpI domain protein.
       0.637
Xcel_2863
PFAM: Ankyrin; SMART: Ankyrin; KEGG: sfu:Sfum_1848 ankyrin.
       0.637
Xcel_2864
KEGG: sfu:Sfum_1849 hypothetical protein.
       0.637
Xcel_2860
Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: swi:Swit_1492 anti-sigma-factor antagonist.
       0.636
Xcel_2861
KEGG: hch:HCH_06731 N-acyl-D-glucosamine 2- epimerase.
       0.636
Xcel_2856
Protein serine/threonine phosphatase; PFAM: Stage II sporulation E family protein; histidine kinase HAMP region domain protein; Cache domain protein; SMART: protein phosphatase 2C domain protein; histidine kinase HAMP region domain protein; KEGG: glo:Glov_0709 protein serine/threonine phosphatase.
       0.628
Xcel_2857
Putative anti-sigma regulatory factor, serine/threonine protein kinase; KEGG: sat:SYN_02357 anti-sigma regulatory factor.
       0.628
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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