STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2889Putative RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily; TIGRFAM: DNA binding domain protein, excisionase family; PFAM: regulatory protein MerR; Prophage CP4-57 regulatory; KEGG: maq:Maqu_3385 DNA binding domain-containing protein. (167 aa)    
Predicted Functional Partners:
Xcel_0847
KEGG: pde:Pden_1953 hypothetical protein.
 
  
 0.819
Xcel_0803
KEGG: rce:RC1_3520 hypothetical protein.
 
  
 0.788
Xcel_0848
TIGRFAM: DNA binding domain protein, excisionase family; KEGG: vei:Veis_4162 DNA binding domain, excisionase family.
  
     0.752
Xcel_1601
TIGRFAM: DNA binding domain protein, excisionase family; KEGG: cak:Caul_0338 DNA binding domain-containing protein.
  
     0.721
Xcel_2888
Putative transcriptional regulator; PFAM: AAA-4 family protein; KEGG: csa:Csal_0085 putative transcriptional regulator.
 
     0.520
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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