STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2891PFAM: nitroreductase; KEGG: rle:pRL120186 hypothetical protein. (340 aa)    
Predicted Functional Partners:
Xcel_2894
KEGG: dps:DPPB78 hypothetical protein.
     0.975
Xcel_2893
PFAM: polysaccharide biosynthesis protein; KEGG: xom:XOO_3011 GumJ protein.
     
 0.565
Xcel_2892
PFAM: coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein; KEGG: maq:Maqu_2619 coenzyme F420 hydrogenase/dehydrogenase beta subunit.
       0.554
Xcel_0126
KEGG: mrd:Mrad2831_6147 hypothetical protein.
 
    0.521
tadA
CMP/dCMP deaminase zinc-binding protein; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
  
    0.454
Xcel_1386
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pol:Bpro_1367 glyoxalase/bleomycin resistance protein/dioxygenase.
  
    0.449
Xcel_3194
KEGG: aba:Acid345_2164 hypothetical protein.
  
    0.449
Xcel_1503
PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamate synthase; glutamine amidotransferase class-II; KEGG: afw:Anae109_0854 glutamate synthase (ferredoxin).
     
 0.446
ribA
GTP cyclohydrolase II; Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate; Belongs to the GTP cyclohydrolase II family. In the N-terminal section; belongs to the DHBP synthase family.
  
 
 0.438
Xcel_1905
PFAM: ABC-2 type transporter; KEGG: bca:BCE_5484 ABC transporter, permease protein, putative.
 
    0.400
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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