STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2894KEGG: dps:DPPB78 hypothetical protein. (329 aa)    
Predicted Functional Partners:
Xcel_2891
PFAM: nitroreductase; KEGG: rle:pRL120186 hypothetical protein.
     0.975
Xcel_2892
PFAM: coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein; KEGG: maq:Maqu_2619 coenzyme F420 hydrogenase/dehydrogenase beta subunit.
     0.880
Xcel_2893
PFAM: polysaccharide biosynthesis protein; KEGG: xom:XOO_3011 GumJ protein.
 
  
 0.840
Xcel_0148
TIGRFAM: conserved repeat domain protein; KEGG: bcr:BCAH187_A3696 conserved repeat domain protein.
  
     0.689
Xcel_3197
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: regulatory protein LuxR; KEGG: bcj:BCAM1981 LuxR superfamily regulatory protein.
  
     0.615
Xcel_0147
KEGG: bat:BAS3452 hypothetical protein; TIGRFAM: LPXTG-motif cell wall anchor domain protein; conserved repeat domain protein; PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A.
  
     0.610
Xcel_3051
KEGG: hypothetical protein.
  
     0.571
Xcel_1590
PFAM: protein of unknown function DUF214; KEGG: gur:Gura_3474 ABC transporter related.
  
     0.568
Xcel_1842
KEGG: aeh:Mlg_0741 hypothetical protein.
  
     0.541
Xcel_1144
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: csa:Csal_0197 transcriptional regulator, XRE family with cupin sensor protein.
  
     0.535
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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