STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2900PFAM: glycosyl transferase family 2; KEGG: stm:STM3707 glycosyl transferase. (349 aa)    
Predicted Functional Partners:
Xcel_2566
PFAM: glycosyl transferase family 2; KEGG: tbd:Tbd_1875 glycosyl transferase, group 2 family protein.
  
     0.755
Xcel_2906
KEGG: ade:Adeh_2766 undecaprenyl-phosphate galactosephosphotransferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase.
 
  
 0.706
Xcel_2926
KEGG: ade:Adeh_2455 undecaprenyl-phosphate galactosephosphotransferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase.
 
  
 0.664
Xcel_2903
PFAM: glycosyl transferase group 1; KEGG: mfa:Mfla_1273 glycosyl transferase, group 1.
 
 
 0.652
Xcel_2904
KEGG: bcm:Bcenmc03_4245 hypothetical protein.
  
    0.552
Xcel_2901
Hypothetical protein; KEGG: xca:xccb100_3351 conserved surface carbohydrate biosynthesis protein.
       0.538
Xcel_2902
PFAM: glycosyl transferase family 2; KEGG: glycosyltransferase protein.
  
    0.538
Xcel_3082
TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KR domain protein; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; short- chain dehydrogenase/reductase SDR; KEGG: bsu:BSU38860 UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
 
  
 0.491
Xcel_2587
PFAM: ABC-2 type transporter; KEGG: gsu:GSU1504 ABC transporter permease.
 
  
 0.444
Xcel_2567
PFAM: glycosyl transferase family 2; KEGG: sse:Ssed_2991 glycosyl transferase family protein.
  
     0.438
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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