STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2928KEGG: nha:Nham_3709 hypothetical protein. (1284 aa)    
Predicted Functional Partners:
Xcel_2929
KEGG: similar to 5-amp-activated protein kinase, beta subunit.
 
     0.829
Xcel_2930
PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: bcb:BCB4264_A5310 cold shock protein CspC.
       0.774
Xcel_2184
Hypothetical protein; KEGG: sus:Acid_5430 peptidase S9 prolyl oligopeptidase.
  
     0.674
Xcel_3007
KEGG: fibrocystin-L-like protein.
  
     0.648
Xcel_2425
KEGG: hypothetical protein; K03497 chromosome partitioning protein, ParB family.
  
     0.616
Xcel_1269
KEGG: pin:Ping_0445 colicin uptake-like protein.
  
     0.595
Xcel_3123
KEGG: bbt:BBta_3059 hypothetical protein.
  
     0.593
Xcel_2738
KEGG: hypothetical protein.
 
     0.590
Xcel_2407
Hypothetical protein; KEGG: ank:AnaeK_0563 thermosensitive mutation transmembrane protein, SuhR.
  
     0.588
Xcel_1661
Hypothetical protein.
  
     0.575
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.