STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2929KEGG: similar to 5-amp-activated protein kinase, beta subunit. (331 aa)    
Predicted Functional Partners:
Xcel_2928
KEGG: nha:Nham_3709 hypothetical protein.
 
     0.829
Xcel_2930
PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: bcb:BCB4264_A5310 cold shock protein CspC.
 
     0.822
Xcel_2131
Hypothetical protein.
  
     0.683
Xcel_0008
Putative FHA domain containing protein; KEGG: hypothetical protein.
  
     0.653
Xcel_2931
Hypothetical protein; KEGG: GF17743 gene product from transcript GF17743- RA.
 
     0.630
rbpA-2
Hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.
  
     0.624
Xcel_2545
Hypothetical protein; KEGG: DSG4; desmoglein 4; K07599 desmoglein 4.
  
     0.622
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
     0.618
Xcel_1290
PFAM: protein of unknown function YGGT; KEGG: bbk:BARBAKC583_0327 YGGT family protein.
  
     0.584
Xcel_1924
Hypothetical protein.
  
     0.570
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.