STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2931Hypothetical protein; KEGG: GF17743 gene product from transcript GF17743- RA. (745 aa)    
Predicted Functional Partners:
Xcel_2932
PFAM: type III restriction protein res subunit; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: SSL2; DNA helicase.
 
     0.895
Xcel_2929
KEGG: similar to 5-amp-activated protein kinase, beta subunit.
 
     0.630
Xcel_2928
KEGG: nha:Nham_3709 hypothetical protein.
 
     0.574
Xcel_2930
PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: bcb:BCB4264_A5310 cold shock protein CspC.
       0.522
Xcel_2220
Conserved hypothetical protein; KEGG: xca:xccb100_4377 putative ATP-binding protein.
 
     0.520
Xcel_1269
KEGG: pin:Ping_0445 colicin uptake-like protein.
  
     0.494
Xcel_0779
PFAM: UvrD/REP helicase; KEGG: mpo:Mpop_4135 UvrD/REP helicase.
 
   
 0.477
Xcel_1486
PFAM: protein of unknown function DUF245 domain protein; protein of unknown function DUF275 domain protein; KEGG: rpc:RPC_1449 hypothetical protein.
     
 0.448
Xcel_2407
Hypothetical protein; KEGG: ank:AnaeK_0563 thermosensitive mutation transmembrane protein, SuhR.
  
     0.436
Xcel_0780
PFAM: UvrD/REP helicase; KEGG: acr:Acry_0218 UvrD/REP helicase; Belongs to the helicase family. UvrD subfamily.
 
  
 0.433
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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