STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2945PFAM: lipolytic protein G-D-S-L family; KEGG: bcr:BCAH187_A2589 putative lipase/acylhydrolase. (289 aa)    
Predicted Functional Partners:
Xcel_0220
PFAM: glycosyl transferase group 1; KEGG: bha:BH2688 alpha-D-mannose-alpha(1- 6)phosphatidyl myo-inositol monomannoside transferase.
 
      0.899
Xcel_2933
KEGG: SNF2 superfamily protein.
  
 
 0.769
Xcel_2946
Hypothetical protein; KEGG: GL17023 gene product from transcript GL17023- RA.
       0.671
Xcel_2954
PFAM: alanine racemase domain protein; KEGG: bur:Bcep18194_B3007 amino acid aldolase or racemase-like.
  
     0.669
ung
uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.
  
    0.603
Xcel_2532
PFAM: glycoside hydrolase family 28; SMART: Parallel beta-helix repeat; KEGG: sus:Acid_1250 glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 28 family.
  
 
 0.599
Xcel_2087
PFAM: DNA-directed DNA polymerase; SMART: DNA-directed DNA polymerase; KEGG: ppw:PputW619_5105 DNA polymerase I.
  
    0.575
Xcel_2955
TIGRFAM: FAD-linked oxidoreductase; PFAM: D-arabinono-14-lactone oxidase; FAD linked oxidase domain protein; KEGG: bur:Bcep18194_B3008 FAD-linked oxidoreductase.
 
     0.551
Xcel_1893
PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: sfu:Sfum_1404 3-hydroxyacyl-CoA dehydrogenase, NAD-binding.
 
  
 0.513
Xcel_1023
PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: rle:RL0458 putative adenylate cyclase.
  
     0.496
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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