STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2947PFAM: DSBA oxidoreductase. (285 aa)    
Predicted Functional Partners:
Xcel_0904
PFAM: Vitamin K epoxide reductase; SMART: Vitamin K epoxide reductase.
 
  
 0.681
Xcel_2423
Hypothetical protein; KEGG: vco:VC0395_A1354 HlyD family secretion protein.
  
     0.671
rbpA-2
Hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.
  
     0.640
Xcel_0444
PFAM: Redoxin domain protein; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: scl:sce9086 thioredoxin family protein.
 
 
 0.626
Xcel_2948
PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; protein of unknown function RIO1; aminoglycoside phosphotransferase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: mxa:MXAN_4017 serine/threonine protein kinase.
     
 0.610
Xcel_1286
PFAM: cell division protein FtsQ; Polypeptide- transport-associated domain protein FtsQ-type; KEGG: swi:Swit_3942 polypeptide-transport- associated domain-containing protein.
  
   
 0.604
Xcel_1186
Hypothetical protein.
  
     0.583
Xcel_2942
Hypothetical protein; KEGG: mgm:Mmc1_2179 putative outer membrane adhesin like proteiin.
  
     0.573
Xcel_3029
Domain of unknown function DUF1794; May play a role in the intracellular transport of hydrophobic ligands.
  
    0.497
Xcel_0791
Conserved hypothetical protein; KEGG: Phlpp; PH domain and leucine rich repeat protein phosphatase; K01090 protein phosphatase.
  
     0.496
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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