STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2976Hypothetical protein. (61 aa)    
Predicted Functional Partners:
lysS
TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: dvl:Dvul_0888 lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family.
       0.819
Xcel_2975
Hypothetical protein.
       0.648
Xcel_2978
PFAM: NADP oxidoreductase coenzyme F420-dependent; KEGG: lch:Lcho_0023 NADP oxidoreductase coenzyme F420-dependent.
       0.635
Xcel_2984
2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin.
       0.605
Xcel_2980
PFAM: membrane-flanked domain; KEGG: eli:ELI_13595 hypothetical protein.
       0.590
Xcel_2979
PFAM: membrane-flanked domain; KEGG: sal:Sala_3015 membrane-flanked domain- containing protein.
       0.574
Xcel_2983
Hypothetical protein.
 
     0.536
Xcel_2634
KEGG: acp:A2cp1_2377 secretion protein HlyD family protein.
  
     0.501
Xcel_2982
PFAM: membrane-flanked domain; KEGG: aeh:Mlg_1150 membrane-flanked domain- containing protein.
       0.488
Xcel_2974
KEGG: hypothetical protein.
 
     0.485
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.