STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2993PFAM: extracellular solute-binding protein family 1; KEGG: pmr:PMI0190 ferric ABC transporter, iron- binding protein. (350 aa)    
Predicted Functional Partners:
Xcel_2994
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pde:Pden_4650 binding-protein-dependent transport systems inner membrane component.
 
 
 0.997
fbpC
ABC transporter related protein; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.
 
 
 0.990
Xcel_0179
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_3245 binding-protein-dependent transport systems inner membrane component.
 
  
 0.838
Xcel_2991
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: rec:RHECIAT_CH0002804 putative two-component sensor histidine kinase protein.
 
    0.677
Xcel_2992
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: ank:AnaeK_4125 two component transcriptional regulator, winged helix family.
     0.626
Xcel_1835
PFAM: major facilitator superfamily MFS_1; KEGG: tbd:Tbd_1524 major facilitator transporter.
  
  
 0.623
Xcel_2255
PFAM: major facilitator superfamily MFS_1; General substrate transporter; KEGG: aci:ACIAD0233 MFS family transporter.
  
  
 0.605
Xcel_0180
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pzu:PHZ_c1203 spermidine/putrescine ABC transporter, ATP-binding protein.
 
  
 0.554
Xcel_2309
PFAM: periplasmic binding protein; KEGG: abm:ABSDF1953 iron ABC transporter periplasmic substrate-binding protein.
 
  
 0.484
tilS
tRNA(Ile)-lysidine synthetase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family.
  
   0.411
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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