STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2996TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D- alanyl-D-alanine-endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C; KEGG: scl:sce7243 D-alanyl-D-alanine carboxypeptidase. (468 aa)    
Predicted Functional Partners:
Xcel_2990
Conserved hypothetical protein.
 
  
 0.807
Xcel_2863
PFAM: Ankyrin; SMART: Ankyrin; KEGG: sfu:Sfum_1848 ankyrin.
 
 
 
 0.739
ppa
Inorganic diphosphatase; Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions.
       0.610
Xcel_0020
Peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase; KEGG: mfa:Mfla_2494 peptidoglycan glycosyltransferase.
      
 0.567
Xcel_2489
PFAM: Aldose 1-epimerase; KEGG: esa:ESA_04055 hypothetical protein.
  
    0.523
Xcel_3275
PFAM: penicillin-binding protein transpeptidase; KEGG: mxa:MXAN_7139 putative penicillin-binding protein.
      
 0.514
tilS
tRNA(Ile)-lysidine synthetase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family.
     
 0.502
Xcel_2988
KEGG: bha:BH0084 hypoxanthine-guanine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; Belongs to the purine/pyrimidine phosphoribosyltransferase family.
     
 0.492
Xcel_2998
PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: ank:AnaeK_3360 alcohol dehydrogenase zinc- binding domain protein.
       0.435
Xcel_2999
PFAM: Luciferase-like monooxygenase; KEGG: rpi:Rpic_0157 luciferase-like monooxygenase.
       0.435
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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