STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2998PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: ank:AnaeK_3360 alcohol dehydrogenase zinc- binding domain protein. (353 aa)    
Predicted Functional Partners:
Xcel_2999
PFAM: Luciferase-like monooxygenase; KEGG: rpi:Rpic_0157 luciferase-like monooxygenase.
       0.773
ppa
Inorganic diphosphatase; Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions.
  
    0.688
Xcel_3091
PFAM: 5'-Nucleotidase domain protein; metallophosphoesterase; nucleic acid binding OB-fold tRNA/helicase-type; Endonuclease/exonuclease/phosphatase; Carbohydrate-binding family V/XII; SMART: Carbohydrate-binding family V/XII; KEGG: rpb:RPB_0803 5'-nucleotidase.
   
 
  0.523
purH
KEGG: pla:Plav_1319 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme formylation region; MGS domain protein; SMART: AICARFT/IMPCHase bienzyme formylation region.
    
 0.519
Xcel_2405
PFAM: iron-containing alcohol dehydrogenase; Aldehyde Dehydrogenase; KEGG: apa:APP7_1068 alcohol dehydrogenase / acetaldehyde dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
 
 0.504
Xcel_3327
KEGG: jan:Jann_1856 glutamine amidotransferase.
     
  0.499
Xcel_2012
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
   
  
 0.437
Xcel_2996
TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D- alanyl-D-alanine-endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C; KEGG: scl:sce7243 D-alanyl-D-alanine carboxypeptidase.
       0.435
Xcel_2828
TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: pen:PSEEN1988 xylulokinase.
  
  
 0.427
Xcel_1893
PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: sfu:Sfum_1404 3-hydroxyacyl-CoA dehydrogenase, NAD-binding.
  
  
 0.422
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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