STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_2999PFAM: Luciferase-like monooxygenase; KEGG: rpi:Rpic_0157 luciferase-like monooxygenase. (294 aa)    
Predicted Functional Partners:
Xcel_3009
TIGRFAM: LPPG domain protein containing protein; PFAM: protein of unknown function UPF0052 and CofD; KEGG: eba:p2A344 LPPG:FO 2-phospho-L-lactate transferase.
 
   
 0.775
Xcel_2998
PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: ank:AnaeK_3360 alcohol dehydrogenase zinc- binding domain protein.
       0.773
Xcel_1131
TIGRFAM: F420-dependent oxidoreductase; PFAM: protein of unknown function DUF129; KEGG: bpy:Bphyt_4255 F420-dependent oxidoreductase.
 
   
 0.756
ppa
Inorganic diphosphatase; Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions.
       0.682
Xcel_3010
PFAM: protein of unknown function DUF121; KEGG: swi:Swit_0413 hypothetical protein.
 
   
 0.670
Xcel_0425
TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; SMART: extracellular solute-binding protein family 3; KEGG: bur:Bcep18194_B1761 ABC transporter, substrate-binding protein, aliphatic sulphonates.
 
    0.451
Xcel_0433
Monooxygenase; KEGG: scl:sce0168 monooxygenase.
 
    0.444
Xcel_2996
TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D- alanyl-D-alanine-endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C; KEGG: scl:sce7243 D-alanyl-D-alanine carboxypeptidase.
       0.435
Xcel_0176
Hypothetical protein.
  
     0.424
Xcel_0436
KEGG: mlo:mll9181 hypothetical protein.
 
    0.415
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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