STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_3015PFAM: GCN5-related N-acetyltransferase; KEGG: bvi:Bcep1808_3667 GCN5-related N- acetyltransferase. (316 aa)    
Predicted Functional Partners:
Xcel_3014
PFAM: nitroreductase; KEGG: dde:Dde_1353 nitroreductase family protein.
       0.768
Xcel_3016
PFAM: FAD linked oxidase domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: noc:Noc_0464 hypothetical protein.
       0.697
Xcel_0035
PFAM: GCN5-related N-acetyltransferase; KEGG: ppf:Pput_3213 GCN5-related N- acetyltransferase.
  
   0.566
Xcel_3123
KEGG: bbt:BBta_3059 hypothetical protein.
  
     0.559
Xcel_0462
KEGG: hypothetical protein.
  
    0.534
Xcel_3198
Transcriptional regulator, AraC family; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bac:BamMC406_3145 AraC family transcriptional regulator.
  
     0.533
Xcel_3017
PFAM: OsmC family protein; KEGG: oan:Oant_0956 OsmC family protein.
       0.503
Xcel_2340
PFAM: peptidase U61 LD-carboxypeptidase A; KEGG: kpn:KPN_02069 L, D-carboxypeptidase A (in murein recycling).
  
    0.488
Xcel_0381
Hypothetical protein; KEGG: mpt:Mpe_A2047 ABC transporter, permease protein.
  
     0.478
Xcel_0148
TIGRFAM: conserved repeat domain protein; KEGG: bcr:BCAH187_A3696 conserved repeat domain protein.
  
    0.470
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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