STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_3017PFAM: OsmC family protein; KEGG: oan:Oant_0956 OsmC family protein. (147 aa)    
Predicted Functional Partners:
Xcel_2949
TIGRFAM: trehalose-phosphatase; PFAM: glycosyl transferase family 20; trehalose- phosphatase; KEGG: scl:sce0488 Alpha,alpha-trehalose-phosphate synthase (UDP-forming).
   
    0.694
Xcel_0191
PFAM: GAF domain protein; histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; SMART: GAF domain protein; ATP-binding region ATPase domain protein; KEGG: scl:sce2236 putative two-component system sensor kinase.
   
    0.567
Xcel_1791
PFAM: Ferritin Dps family protein; KEGG: pha:PSHAa2456 stress response DNA-binding protein Dps; Belongs to the Dps family.
  
  
 0.567
Xcel_3016
PFAM: FAD linked oxidase domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: noc:Noc_0464 hypothetical protein.
       0.553
Xcel_3018
KEGG: DCL3; dicer-like protein.
       0.516
Xcel_3014
PFAM: nitroreductase; KEGG: dde:Dde_1353 nitroreductase family protein.
     
 0.514
Xcel_2052
PFAM: CsbD family protein; KEGG: hypothetical protein.
  
  
 0.511
Xcel_3015
PFAM: GCN5-related N-acetyltransferase; KEGG: bvi:Bcep1808_3667 GCN5-related N- acetyltransferase.
       0.503
Xcel_2862
PFAM: ThiJ/PfpI domain protein; KEGG: sfu:Sfum_0357 ThiJ/PfpI domain protein.
 
    0.492
Xcel_2738
KEGG: hypothetical protein.
 
    0.408
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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