STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_3031Hypothetical protein; KEGG: cvi:CV_1488 ferric citrate transport system permease protein. (161 aa)    
Predicted Functional Partners:
Xcel_3032
KEGG: eca:ECA1555 hypothetical protein.
 
     0.946
Xcel_3029
Domain of unknown function DUF1794; May play a role in the intracellular transport of hydrophobic ligands.
 
     0.609
Xcel_3028
TIGRFAM: folate-binding protein YgfZ; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: aba:Acid345_2628 glycine cleavage T protein, aminomethyl transferase; Belongs to the GcvT family.
       0.541
Xcel_3027
Membrane protein-like protein; KEGG: hypothetical protein.
       0.486
Xcel_3033
PFAM: YceI family protein; KEGG: afw:Anae109_3192 YceI family protein; Belongs to the UPF0312 family.
       0.463
Xcel_0719
PFAM: conserved hypothetical protein; KEGG: afw:Anae109_3197 hypothetical protein.
      
 0.414
Xcel_3024
Hypothetical protein.
       0.405
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.