STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_3057PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gme:Gmet_2407 ABC transporter-related protein. (255 aa)    
Predicted Functional Partners:
Xcel_3058
PFAM: protein of unknown function DUF214; KEGG: gbm:Gbem_0436 protein of unknown function DUF214.
 
  
 0.955
Xcel_2604
PFAM: protein of unknown function DUF214; KEGG: eba:ebA6805 hypothetical protein.
 
 0.903
Xcel_3156
PFAM: protein of unknown function DUF214; KEGG: gur:Gura_3474 ABC transporter related.
   0.897
Xcel_0345
PFAM: protein of unknown function DUF214; KEGG: acp:A2cp1_1921 protein of unknown function DUF214.
 
   0.871
Xcel_1615
PFAM: protein of unknown function DUF214; KEGG: dar:Daro_1168 hypothetical protein.
   0.862
Xcel_0816
PFAM: protein of unknown function DUF214; KEGG: gur:Gura_3474 ABC transporter related.
   0.850
Xcel_0100
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_C1161 polar amino acid ABC transporter inner membrane protein.
 
 
    0.731
Xcel_0265
KEGG: oan:Oant_4612 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
     
0.671
Xcel_2720
PFAM: protein of unknown function DUF214; KEGG: jan:Jann_3687 hypothetical protein.
 
   0.622
Xcel_3059
Putative transcriptional regulator; PFAM: AAA-4 family protein; KEGG: noc:Noc_0057 hypothetical protein.
       0.613
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.