STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_3059Putative transcriptional regulator; PFAM: AAA-4 family protein; KEGG: noc:Noc_0057 hypothetical protein. (599 aa)    
Predicted Functional Partners:
Xcel_2855
Putative transcriptional regulator; PFAM: AAA-4 family protein; KEGG: tbd:Tbd_2681 transcriptional regulator.
  
  
  0.972
Xcel_2888
Putative transcriptional regulator; PFAM: AAA-4 family protein; KEGG: csa:Csal_0085 putative transcriptional regulator.
  
  
  0.968
Xcel_2279
ATP-dependent DNA helicase RecG; KEGG: mrd:Mrad2831_1662 DEAD/DEAH box helicase domain-containing protein; TIGRFAM: ATP-dependent DNA helicase RecG; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; nucleic acid binding OB-fold tRNA/helicase-type; SMART: DEAD-like helicase; helicase domain protein.
     
  0.900
Xcel_3057
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gme:Gmet_2407 ABC transporter-related protein.
       0.613
Xcel_3058
PFAM: protein of unknown function DUF214; KEGG: gbm:Gbem_0436 protein of unknown function DUF214.
       0.613
Xcel_1406
Hypothetical protein.
  
     0.542
Xcel_3060
Hypothetical protein.
       0.517
Xcel_1601
TIGRFAM: DNA binding domain protein, excisionase family; KEGG: cak:Caul_0338 DNA binding domain-containing protein.
 
     0.483
Xcel_0288
PFAM: NAD-dependent epimerase/dehydratase; KEGG: gbe:GbCGDNIH1_1597 quinate/shikimate dehydrogenase.
   
    0.435
Xcel_2089
PFAM: NAD-dependent epimerase/dehydratase; KEGG: xcv:XCV0076 hypothetical protein.
   
    0.435
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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