STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_3064KEGG: rsq:Rsph17025_3751 hypothetical protein. (386 aa)    
Predicted Functional Partners:
Xcel_2933
KEGG: SNF2 superfamily protein.
  
 
 0.769
Xcel_2532
PFAM: glycoside hydrolase family 28; SMART: Parallel beta-helix repeat; KEGG: sus:Acid_1250 glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 28 family.
  
 
 0.599
Xcel_3063
PFAM: NUDIX hydrolase; KEGG: bbt:BBta_3942 putative NUDIX-like hydrolase.
       0.568
Xcel_2644
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; KEGG: bpm:BURPS1710b_1102 putative lipoprotein.
  
     0.491
Xcel_2645
Hypothetical protein.
  
     0.435
Xcel_1893
PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: sfu:Sfum_1404 3-hydroxyacyl-CoA dehydrogenase, NAD-binding.
 
  
 0.431
Xcel_1150
PFAM: glycoside hydrolase family 6; Fibronectin type III domain protein; cellulose-binding family II; SMART: cellulose-binding family II; Fibronectin type III domain protein; KEGG: xfa:XF1267 1,4-beta-cellobiosidase; Belongs to the glycosyl hydrolase family 6.
  
 
 0.420
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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