STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_3065KEGG: ret:RHE_CH02708 hypothetical protein. (187 aa)    
Predicted Functional Partners:
Xcel_3066
PFAM: Copper amine oxidase; Copper amine oxidase N3-terminal; Copper amine oxidase N2-terminal; KEGG: rle:RL3036 tyramine oxidase.
       0.773
Xcel_3067
PFAM: amino acid permease-associated region; KEGG: bpy:Bphyt_1999 amino acid permease-associated region.
       0.737
Xcel_3068
PFAM: amino acid permease-associated region; KEGG: msl:Msil_2831 amino acid permease-associated region.
       0.437
Xcel_3069
Transcriptional regulator, IclR family; PFAM: regulatory protein IclR; SMART: regulatory protein IclR; KEGG: dac:Daci_0796 IclR family transcriptional regulator.
       0.437
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.